The invention discloses a flow-type electric punching device. The flow-type electric punching device comprises a stereoscopic electrode device and a flow-type electric punching chamber, wherein the stereoscopic electrode device comprises an electrode array and an electrode fixing component, the electrode array is fixed on the electrode fixing component, the flow-type electric punching chamber comprises a cavity, an inlet, an outlet and an opening, the inlet, the outlet and the opening are formed in the cavity, and the electrode array is inserted in the cavity through the opening. By the manner, the flow-type electric punching device can be used for realizing the high-throughput cell treatment, can also work under the condition of relatively low voltage and is capable of avoiding the damage of the influence caused by liquid flowing on cells, reducing the heat caused by voltage pulse and the influence caused by a cathode effect, maintaining a closed aseptic environment and ensuring that the optimal number of times of electric field pulses are applied to the vast majority of cell suspension.