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40 results about "Proteolysis targeting chimera" patented technology

A proteolysis targeting chimera (PROTAC) is a heterofunctional small molecule composed of two active domains and a linker capable of removing specific unwanted proteins. Rather than acting as a conventional enzyme inhibitor, a PROTAC works by inducing selective intracellular proteolysis. PROTACs consist of two covalently linked protein-binding molecules: one capable of engaging an E3 ubiquitin ligase, and another that binds to a target protein meant for degradation. Recruitment of the E3 ligase to the target protein results in ubiquitination and subsequent degradation of the target protein by the proteasome. Because PROTACs need only to bind their targets with high selectivity (rather than inhibit the target protein's enzymatic activity), there are currently many efforts to retool previously ineffective inhibitor molecules as PROTACs for next-generation drugs.

Protein degradation targeted chimera connector generation method based on deep reinforcement learning

The invention discloses a protein degradation targeted chimera linker generation method based on deep reinforcement learning, which comprises the following steps: expanding a constructed ZINC data set and a PROTAC data set by using a data enhancement method, and taking the obtained first ZINC data set and first PROTAC data set as a supervision training set; constructing a Transform model, and setting a training step number, a network layer number, an attention layer number and optimizer parameters; training a Transform model by using the first ZINC data set, and training and updating the Transform model by using an objective function and a back propagation algorithm; the first PROTAC data set is used for training the updated Transform model, the Transform model is migrated to a PROTAC target domain, and a Prior prior model is obtained; inputting the segment pair SMILES into a Prior prior model for batch generation, scoring the generated PROTAC by using a scoring function, introducing a strategy gradient algorithm of reinforcement learning, and updating an Agent model; repeating until the PROTAC score is no longer increased or the training step number is reached; and the updated Agent model is utilized to realize large-scale generation of the protein degradation targeted chimera linker conforming to expected attributes under the condition of given fragment pairs.
Owner:SUN YAT SEN UNIV
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