The application provides an
antigen detection
system and method thereof, comprising: a variation detection module, configured to receive tumor
genome sequencing data and normal
genome sequencing data, process the tumor
genome sequencing data and the normal genome sequencing data using a GATK tool to detect somatic mutations of SNV /
INDEL types of the tumor, detect variations of a
gene fusion type by using STARfusion
software, detect variations of a variable splicing type by using NeoSplice
software, and be capable of connecting external existing
gene variation detection data; and an HLA
typing module, configured to receive the tumor genome sequencing data and the normal genome sequencing data. The
antigen detection
system and method thereof provided by the application can comprehensively analyze and obtain a candidate neoantigen
list from the tumor genome sequencing data, cover multiple
gene variation types (SNV /
INDEL, gene fusion, variable splicing), and have detection capabilities of
MHC class I and
MHC class II and HLA
typing capabilities, so that more comprehensive
antigen information is provided for tumor
immunotherapy.