The invention provides an unmanned aerial vehicle mixed system carried by an unmanned ship. The system comprises the unmanned ship, an unmanned aerial vehicle and a mixed communication system. The unmanned ship serves as a water domain movable platform for the unmanned aerial vehicle, and mainly comprises a ship body, a ship-borne control system arranged on the ship body, a ship-borne power device and a ship-borne application device. The unmanned aerial vehicle comprises an unmanned aerial vehicle body and a vehicle-mounted coordinating system. The unmanned aerial vehicle body is provided with a vehicle-mounted navigation device, a vehicle-mounted obstacle-avoiding device, a vehicle-mounted control device, a vehicle-mounted power device and a vehicle-mounted application device. The mixed communication system comprises a ship-borne communication device and a vehicle-mounted communication device. The ship-borne control system of the unmanned ship and the vehicle-mounted control device of the unmanned aerial vehicle body exchange data through the mixed communication system; the ship-borne control system serves as the core for the mixed communication system, and the unmanned ship and the unmanned aerial vehicle are controlled uniformly by an internal bus and a communication board card to work in cooperation. By means of the mixed system, the unmanned ship and the unmanned aerial vehicle can effectively supplement each other in water domain and space domain functions, and meanwhile the disadvantages of the water domain unmanned ship during space domain perpendicular work are compensated for.