The invention discloses a multi-index disease combined detection microfluidic device, which comprises a microfluidic reaction chip, a microfluidic storage chip, a direct current motor driving module,a reaction chip fluid control module, a storage release fluid control module, a temperature control module, and a CCD detection module. Through the cooperation between the reaction chip fluid controlmodule, the storage release fluid control module, the temperature control module, and the microfluidic reaction chip, a sample and a sample diluting solution are mixed; microsphere surface coated antibodies capture target cell specific antigens, non-specific adsorbed cell antigens on the microsphere surface are washed off, target cell antigens specifically absorbed on the microsphere surface capture enzyme labeled antibodies, exciting liquids (A and B) are mixed, enzymes specifically adsorbed on the microsphere surface catalyze the chemiluminescence of the exciting liquids; the CCD detection module detects and collects the chemiluminescence signals of the microsphere surface, and multiple index antigens in a serum sample are captured and detected automatically.