35 results about "Repetitive Element" patented technology

Communication between a remote locator and a transponder is used to determine the relative position of the transponder. The transponder and locator each include a transmitter and a receiver. The locator transmits an inquiry in the form of a relatively powerful cyclically encoded signal with repetitive elements, uniquely associated with a target transponder. Periodically, each transponder correlates its coded ID against a possible inquiry signal, determining frequency, phase and framing in the process. Upon a match, the transponder transmits a synthesized response coherent with the received signal. The locator integrates multiple cyclical response elements, allowing low-power transmissions from the transponder. The locator correlates the integrated response, determines round-trip Doppler shift, time-of-flight, and then computes the distance and angle to the transponder. The transponder can be wearable, bionically implanted, or attached to, or embedded in, some object.

The present invention is in the field of plant genetics. More specifically the invention relates to nucleic acid molecules and nucleic acid molecules that contain markers, in particular, single nucleotide polymorphism (SNP) and repetitive element markers. In addition, the present invention provides nucleic acid molecules having regulatory elements or encoding proteins or fragments thereof. The invention also relates to proteins and fragments of proteins so encoded and antibodies capable of binding the proteins. The invention also relates to methods of using the nucleic acid molecules, markers, repetitive elements and fragments of repetitive elements, regulatory elements, proteins and fragments of proteins.

Spectrogram extraction from DNA sequence has been known since 2001. A DNA spectrogram is generated by applying Fourier transform to convert a symbolic DNA sequence consisting of letters A, T, C, G into a visual representation that highlights periodicities of co-occurrence of DNA patterns. Given a DNA sequence or whole genomes, with this method it is easy to generate a large number of spectrogram images. However, the difficult part is to elucidate where are the repetitive patterns and to associate a biological and clinical meaning to them. The present disclosure provides systems and methods that facilitate the location and/or identification of repetitive DNA patterns, such as CpG islands, Alu repeats, tandem repeats and various types of satellite repeats. These repetitive elements can be found within a chromosome, within a genome or across genomes of various species. The disclosed systems and methods apply image processing operators to find prominent features in the vertical and horizontal direction of the DNA spectrograms. Systems and methods for fast, full scale analysis of the derived images using supervised machine learning methods are also disclosed. The disclosed systems and methods for detecting and/or classifying repetitive DNA patterns include: (a) comparative histogram method, (b) feature selection and classification using support vector machines and genetic algorithms, and (c) generation of spectrovideo from a plurality of spectral images.

The present invention is in the field of plant biochemistry and genetics. More specifically the invention relates to nucleic acid molecules from plant cells, in particular, genomic DNA sequences from rice plants and nucleic acid molecules that contain markers, in particular, single nucleotide polymorphism (SNP) and repetitive element markers. In addition, the present invention provides nucleic acid molecules having regulatory elements or encoding proteins or fragments thereof. The invention also relates to proteins and fragments of proteins so encoded and antibodies capable of binding the proteins. The invention also relates to methods of using the nucleic acid molecules, markers, repetitive elements and fragments of repetitive elements, regulatory elements, proteins and fragments of proteins, and antibodies, for example for genome mapping, gene identification and analysis, plant breeding, preparation of constructs for use in plant gene expression, and transgenic plants.

The present invention is transgenic chickens obtained from long-term cultures of avian PGCs and techniques to produce and transgenic birds derived from prolonged PGC cultures. In some embodiments, these PGCs can be transfected with genetic constructs to modify the DNA of the PGC, specifically to introduce a transgene encoding an exogenous protein. When combined with a host avian embryo by known procedures, those modified PGCs are transmitted through the germline to yield transgenic offspring. This invention includes compositions comprising long-term cultures of PGCs and offspring derived from them that are genetically modified. The genetic modifications introduced into PGCs to achieve the gene inactivation may also include, but are not restricted to, random integrations of transgenes into the genome, transgenes inserted into the promoter region of genes, transgenes inserted into repetitive elements in the genome, site specific changes to the genome that are introduced using integrase, site specific changes to the genome introduced by homologous recombination, and conditional mutations introduced into the genome by excising DNA that is flanked by lox sites or other sequences that are substrates for site specific recombination.

The present invention is in the field of plant genetics. More specifically the invention relates to nucleic acid molecules and nucleic acid molecules that contain markers, in particular, single nucleotide polymorphism (SNP) and repetitive element markers. In addition, the present invention provides nucleic acid molecules having regulatory elements or encoding proteins or fragments thereof. The invention also relates to proteins and fragments of proteins so encoded and antibodies capable of binding the proteins. The invention also relates to methods of using the nucleic acid molecules, markers, repetitive elements and fragments of repetitive elements, regulatory elements, proteins and fragments of proteins.

The present invention is in the field of plant genetics. More specifically the invention relates to nucleic acid molecules and nucleic acid molecules that contain markers, in particular, single nucleotide polymorphism (SNP) and repetitive element markers. In addition, the present invention provides nucleic acid molecules having regulatory elements or encoding proteins or fragments thereof. The invention also relates to proteins and fragments of proteins so encoded and antibodies capable of binding the proteins. The invention also relates to methods of using the nucleic acid molecules, markers, repetitive elements and fragments of repetitive elements, regulatory elements, proteins and fragments of proteins.

The present invention is in the field of plant genetics. More specifically the invention relates to nucleic acid molecules and nucleic acid molecules that contain markers, in particular, single nucleotide polymorphism (SNP) and repetitive element markers. In addition, the present invention provides nucleic acid molecules having regulatory elements or encoding proteins or fragments thereof. The invention also relates to proteins and fragments of proteins so encoded and antibodies capable of binding the proteins. The invention also relates to methods of using the nucleic acid molecules, markers, repetitive elements and fragments of repetitive elements, regulatory elements, proteins and fragments of proteins.

The present invention relates to a liquid crystal alignment agent, a liquid crystal alignment film and a liquid crystal display element. The present invention provides the liquid crystal alignment agent which can form the liquid crystal alignment film that represents excellent liquid crystal alignment controlling force (tile angle expressiveness of liquid crystal) and can restrain the DC accumulation when exerted with heat stress that is taken as a main reason of liquid crystal panel hot-damage. The liquid crystal alignment agent comprises the polymer of specific repetitive elements represented by the right formula (1-1) and at least one polymer selected from a group which is composed of polyamic acid and the imidization polymer thereof, wherein the polyamic acid is obtained through the reaction between the tetracarboxylic dianhydride and the diamine. In the formula (1-1), R is hydrogen atom or methyl.

A method and system to analyze repetitive elements of in hereditary material as fractal sets, and analyze and interpret the hereditary information for biological research and medical procedures. The fractal genomic information is analyzed for correspondences to healthy or pathological structural and functional properties of cells, organelles, or organisms. One embodiment of the invention uses analytical tools to analyze and interpret DNA sequences and their aberrant repetitions, fractal defects, of DNA sequences. Various embodiments of the present invention are directed to a method, system, or program for fractal analysis and fractal interpretation of repetitive elements in genomic information for existing and synthetic organisms.

The present invention is transgenic chickens obtained from long-term cultures of avian PGCs and techniques to produce and transgenic birds derived from prolonged PGC cultures. In some embodiments, these PGCs can be transfected with genetic constructs to modify the DNA of the PGC, specifically to introduce a transgene encoding an exogenous protein. When combined with a host avian embryo by known procedures, those modified PGCs are transmitted through the germline to yield transgenic offspring. This invention includes compositions comprising long-term cultures of PGCs and offspring derived from them that are genetically modified. The genetic modifications introduced into PGCs to achieve the gene inactivation may also include, but are not restricted to, random integrations of transgenes into the genome, transgenes inserted into the promoter region of genes, transgenes inserted into repetitive elements in the genome, site specific changes to the genome that are introduced using integrase, site specific changes to the genome introduced by homologous recombination, and conditional mutations introduced into the genome by excising DNA that is flanked by lox sites or other sequences that are substrates for site specific recombination.

The invention belongs to the field of biological technical application, and relates to a multiple fluorescent PCR method and a kit for simultaneous detection of human adenovirus, human mycoplasma pneumonia and bocavirus and containing internal quality control. The invention designs specific primers and probes aiming at conserved sequences of human adenovirus HP (hexonprotein) gene, human mycoplasma pneumonia RP gene (repetitive element RepMP5e) and bocavirus NP1 (Nucleoprotein) gene, and establishes a one-step multiple fluorescent RT-PCR rapid detection method containing internal quality control; the method has simple and quick operations, overcomes the complexity of single hole single detection in a conventional single fluorescent RT-PCR method, simplifies the operation process, saves test cost, and provides a powerful technical support for on-site virus detection, health assessment and clinical diagnosis by using high specificity, sensitivity, efficiency and stability.

A novel method of suppressing non-specific cross-hybridization between repetitive elements present in nucleic acid probes and corresponding repetitive elements in the target nucleic acid by using DNA synthesized to contain a plurality of repetitive elements while avoiding low and single copy sequences.

Aspects of the invention relate to simulation of circuits with repetitive elements. With various implementations of the invention, a circuit design for simulation is analyzed to derive information of memory-circuit device groups that comprise word-line-driven device groups. If the circuit design is hierarchically structured, the circuit design is flattened to the device level but keep the memory-circuit device groups intact. The circuit design is then partitioned into a plurality of subcircuits for simulation. During transient simulation, whether an instance of a word-line-driven device group is activated is first determined. If activated, whether device model values exist for the word-line-driven device group at a voltage state associated with the activated instance is then determined. If they exist, the device model values are associated with the activated instance. If they do not exist, the device model values are computed for, stored for and associated with the activated instance.

The invention relates to gene silencing as observed after integration of transgenes into plant genomes. Comparison of transcriptional gene expression between an Arabidopsis line carrying a silent transgene present in multiple copies and its mutant derivative mom1 impaired in silencing of the transgene revealed two cDNA clones which are expressed in the mutant plants, but not in the parental and not in wild type plants. Both clones are derived from the same family of transcripts referred to as TSI (Transcriptionally Silent Information). Genomic templates encoding TSI are repetitive elements with mainly pericentromeric location and conserved organization among various ecotypes. Transcriptional silencing of the genomic TSI templates is specifically released in the mutant. Transcription of TSI can be used as a marker to identify a defective silencing pathway in a plant.

Systems and methods for using the same for dynamically generating repeat libraries for use in detecting and for masking out repetitive elements in species having poorly characterized genomes or transcriptomes based on phylogenetic analysis are provided herein. Dynamically generated repeat libraries find use, for example, in the design and use of probes for identification of specific targets in these poorly characterized species.

The present invention relates to a method for cancer diagnosis and for monitoring cancer treatments based on the analysis of the DNA fragmentation pattern of repetitive elements (preferably LINED or multi copy genes (preferably U1 RNA) identified in body fluid samples isolated from cancer patients.