Described herein are systems, methods, and devices for
pathogen identification. The
system includes a housing configured to receive a sample containing a
pathogen, a pipetter
system disposed within the housing, a
centrifuge disposed within the housing, a mechanical
agitator disposed within the housing, and a controller. The controller is configured to transfer the sample to a
processing tube using the pipetter
system,
centrifuge the
processing tube using the
centrifuge to concentrate the pathogens in the sample, remove liquid from the
processing tube using the pipetter system to leave the concentrated pathogens in the processing tube, add a
lysis buffer to the processing tube using the pipetter system, move the processing tube to a mechanical
agitator using the pipetter system, and agitate the processing tube using the mechanical
agitator to lyse the concentrated pathogens. The system is further configured to perform PCR using nucleic acids extracted from the sample.