The invention relates to a longitudinal 
magnetic field modulation based three-axis vector atom 
magnetometer and use method thereof and belongs to the technical field of low-intensity 
magnetic field detection. The longitudinal 
magnetic field modulation based three-axis vector atom 
magnetometer comprises a pumping 
optical path composed of a No.1 895nm DFB 
semiconductor laser, a No.1 convex lens, a No.2 convex lens, a No. 1 linear polarizing film and a Gamma / 4 slide; a detection 
optical path composed of a No.2 895nm DFB 
semiconductor laser, a No.3 convex lens, a No.4 convex lens, a No. 2 linear polarizing film, a 
Wollaston prism and a balance 
detector; a three-dimensional magnetic field generating device composed of a No.1 Helmholtz coils, a No.2 Helmholtz coils and a No.3 Helmholtz coils in mutual orthogonality; a heating device; an atomic gas 
cell; a locking 
amplifier; and a 
signal processing system. According to the invention, since longitudinal magnetic field modulation is adopted, technical 
noise can be reduced in a comparatively large degree. Therefore, extremely high flexibility is achieved. Besides, by utilizing longitudinal magnetic field modulation, inter-axis 
crosstalk can be reduced, so that magnetic field 
direction detection becomes more accurate.