The invention relates to a liquid cooling temperature thermostatic bath system and an intelligent temperature control method thereof, comprising a cooling water tank and a cooling liquid, a liquid bath and a working liquid, and an intelligent temperature controller. The cooling water tank is provided with a water tank temperature sensor and a refrigerator, an electrical heater connected with an electrical heating executor, and a water cooler, a stirrer, a liquid bath temperature sensor, and a water inlet pipe and a water outlet pipe of the water cooler that are connected with the cooling water tank; the other end of the water inlet pipe is connected with a cooling water pump, a signal input end of the intelligent temperature controller is respectively connected with the temperature sensor of the cooling water tank and the temperature sensor of the liquid bath, while the output end is respectively connected with the electrical heating executor, a stirrer engine, the cooling water pump and the refrigerator. The system and the method can drop the temperature at a speed higher than the natural cooling by near 20 times through forced liquid cooling, and can effectively avoid the over regulating of temperature and reduce the negative impact of thermal inertia, thus greatly shortening the precision temperature controlling process and cutting down power consumption.