The intelligent seedling raising system comprises a multi-layer plant seedling raising frame, a closed seedling raising chamber and a control system, and the control system comprises a control host, the multi-layer plant seedling raising frame, the closed seedling raising chamber, a gas supply system, a temperature and humidity control system, a water and fertilizer automatic circulation system, a ventilation system, an LED light supplementing system, a sterilization system and a timing module. The multi-layer plant seedling raising frame is placed in the closed seedling raising chamber and used for closed cultivation of plants, and the ventilation system, the LED light supplementing system and the sterilization system are all connected with the control host through the timing module. According to the intelligent seedling raising system, the seedling raising space is closed, sunlight is comprehensively replaced by artificial light, all seedling raising production elements are comprehensively and accurately controlled, seedling raising is continuous all the year round, the production cycle is short, fertilizer is saved, diseases and insect pests in the seedling raising period are greatly reduced, customization can be conducted according to plans, and the whole process is conducted on a factory production line; therefore, the product has the characteristics of refinement, homogenization and high yield.