The invention relates to grounding vibration experimental method and system of a steel catenary riser. The grounding vibration experimental method of the steel catenary riser comprises the following steps of, firstly, arranging a flume, paving clay which has close physical property and mechanical property with prototype seabed soil at the bottom of the flume, arranging a wave absorbing region at the end of the flume, arranging a water outlet on the flume above the wave absorbing region, and simulating an ocean current in a riser grounding region in a mode of circulating refluxing of effluent, wherein the water level in the flume is higher than the upper surface of the clay; secondly, with the application of a method of truncation simulation, arranging a riser grounding segment model in the limited flume, applying the vertical load and the horizontal lateral load at one end of the riser grounding segment model, and simulating grounding vibration of the steel catenary riser caused by motion of a floating body and a seabed groove formed with pipe-soil interaction; and thirdly, through an acceleration sensor and a strain gauge which are arranged on the riser grounding segment model at intervals, collecting a response signal of grounding vibration of the model, thereby influences on grounding vibration of the steel catenary riser of the seabed surface soil body property and different flow rate damping conditions are acquired.