The invention discloses fluorescent RT-PCR (reverse transcription-polymerase chain reaction) primers and a fluorescent probe for detecting MERS (Middle East Respiratory Syndrome) coronavirus, which comprise a first primer pair, a second primer pair and a probe, wherein the first primer pair, second primer pair and fluorescent probe are a first specific forward / reverse primer pair, a second specific forward / reverse primer pair and a fluorescent probe which are respectively designed for conserved sequences of two different genes of the MERS coronavirus. The invention also discloses a kit and method for detecting the MERS coronavirus. By using the two specific probe pairs and primer which are designed for the conserved sequences of the two different genes of the MERS coronavirus, when the double-target PCR (polymerase chain reaction) detection result is positive, the infection of the MERS coronavirus in the clinical sample can be diagnosed. The method is simple, has the characteristics of high speed, high specificity and high sensitivity, and can be used for auxiliary diagnosis and epidemic situation monitoring of the MERS coronavirus.