The invention discloses a molecular fragment
library based on
protein binding site properties and a construction method and application thereof, and belongs to the field of computer-aided
drug design. The construction method comprises the following steps: acquiring three-dimensional structure data of a
protein-ligand compound, and preprocessing to obtain standardized
protein binding sites and ligand molecules;
cutting the standardized ligand molecules by adopting an iterative molecular
cutting algorithm to generate molecular fragments; identifying and quantifying an interaction between the molecular fragment and an
amino acid residue in the normalized protein
binding site; and associating the molecular fragments, the information of the
amino acid residues interacting with the molecular fragments and the corresponding interaction
modes, and constructing a molecular fragment
library. The
interaction mode of molecular fragments and specific
amino acid residues is labeled, so that the targeting property of the fragment
library is improved; and the candidate fragments with specific
interaction potential can be quickly positioned, so that the
drug design efficiency is improved.