The present invention discloses a PCR primer pair composition for identification or assisted identification of the sturgeon female parent and the sturgeon male parent, and applications thereof. The composition comprises a composition A for identification or assisted identification of the sturgeon female parent, a composition B for identification or assisted identification of the sturgeon parent, and a composition C for identifying or assistedly identifying whether the sturgeon female parent is Acipenser ruthenus, wherein the compositions A, B and C are separately packaged, the composition A comprises AGF, ABF, ABRM, DauF and SchF, the composition B comprises Atr-101, Atr-105, Atr-107, Atr-114, Atr-117, Eu-39, Eu-40, Eu-41, Afu19, Afu22, Afu39, Afu54 and Afu68, and the composition C comprises RutF.