The present invention discloses a comprehensive evaluation method of a micro-grid. The method is characterized by taking an economic evaluation index of the micro-grid, a carbon emission evaluation index of the micro-grid, a reliability evaluation index of the micro-grid and a security evaluation index of the micro-grid as a comprehensive evaluation index of the micro-grid, wherein the economic evaluation G1 (X) of the micro-grid and the carbon emission evaluation G2(X) of the micro-grid are used as the objective functions of the overall comprehensive evaluation max G(X) of the micro-grid, and the reliability evaluation of the micro-grid and the security evaluation of the micro-grid are used as the constraint conditions of the overall comprehensive evaluation max G(X) of the micro-grid, so that a multi-target evaluate model of the investment benefits of the micro-grid is obtained. According to the present invention, the micro-grid is evaluated comprehensively at various aspects of the micro-grid, such as the economy, the reliability, the carbon emission, etc., so that the automation decision is realized, the calculation is simple and convenient, the operability is strong, and the obtained data is more accurate. The comprehensive evaluation method of the micro-grid of the present invention also provides theoretical bases for the technical scheme comparison of a micro-grid engineering and the comprehensive evaluation of the micro-grid.