The invention relates to a model prediction control method of stabilizing wind power fluctuation with hybrid energy storage, and belongs to the technical field of new energy power generation control. The method comprises the steps of determining a topological structure of a control object, namely a system structure comprising wind power, battery energy storage and supercapacitor energy storage, predicting an output value of the wind power within a control prediction interval by utilizing an average value method, determining an objective function and three constraint conditions of optimization control, solving an optimization problem at each moment, only obtaining optimization control quantity at the current moment, inputting the optimization control quantity into a battery and a supercapacitor for control respectively, summing power output by the battery and the supercapacitor and actual output power of the wind power, and then obtaining grid-connected power of an overall system after power fluctuation stabilization. The control method can achieve the power fluctuation stabilization of the wind power more economically and reliably, is simple in calculation, and facilitates engineering realization.