The invention relates to a Fourier transform implementation method based on a reconfigurable technology. In the method, aiming at the common point-based discrete Fourier transform algorithm, the point-based fast Fourier transform computing is decomposed into M exponent arithmetic processes, each exponent arithmetic is composed of N/2 butterfly arithmetics, and each butterfly arithmetic utilizes one twiddle factor, wherein M is any positive integer, and N is the length of a sequence needing to be subject to Fourier transform, namely a corresponding value. The method can be applied to an embedded system which comprises a bus, an embedded microprocessor, a memory, a reconfigurable array and a direct memory access (DMA) controller, wherein the embedded microprocessor, the memory, the reconfigurable array and the DMA controller respectively communicate with the bus. By utilizing the method, the computing efficiency is improved.