The invention discloses a cluster module spacecraft system and a control method of the cluster module spacecraft system and relates to the field of spacecraft systems. The cluster module spacecraft system and the control method of the cluster module spacecraft system aim to solve the problems that once the existing spacecraft system breaks down or service life is due, the existing spacecraft system can not normally work, the whole spacecraft system is scrapped, and loss is large. The cluster module spacecraft system comprises service module spacecrafts and mission module spacecrafts. The number of the service module spacecrafts is M, and the number of the mission module spacecrafts is N. The service module spacecrafts comprise power supplying module spacecrafts, data processing module spacecrafts, remote monitoring and data transmission module spacecrafts and cluster control module spacecrafts. The number of the power supplying module spacecrafts is m, the number of the data processing module spacecrafts is n, the number of the remote monitoring and data transmission module spacecrafts is x, and the number of the cluster control module spacecrafts is y, wherein m, n, x and y are all positive integers. M, m, n, x, and y satisfy the formula of M= m + n + x + y. A single or a plurality of mission module spacecrafts are matched with the service module spacecrafts, and when the mission module spacecrafts are started, the cluster module spacecraft system starts to work. The cluster module spacecraft system is used for accomplishing space mission.