The invention relates to a craniofacial morphological analysis and facial restoration method based on craniofacial denseness corresponding point clouds. The method comprises the steps of 1, acquisition of skull denseness corresponding point clouds; 2, acquisition of facial denseness corresponding point clouds; 3, visual analysis of a craniofacial morphological relation; 4, expression of the craniofacial morphological relation based on soft tissue partitioning; and 5, facial restoration of an unknown body source skull. According to the method, analysis of the craniofacial morphological relation is realized by use of visual analysis based on a principal component coefficient and a quantitative expression method of least square regression, and the problems that craniofacial point cloud data size is large, principal component geometrical significance cannot be easily determined, and the craniofacial morphological relation cannot be easily expressed quantitatively are solved; the problems that the craniofacial morphological relation is complicated, and the craniofacial morphological relation is inconsistent among different regions are solved by use of a craniofacial partitioning method based on soft tissue thickness, and the accuracy of the craniofacial morphological relation is improved; finally, facial restoration of the unknown body source skull is realized by use of the craniofacial morphological relation based on partitioning.