The invention discloses a scutellaria baicalensis seedling culture method, and belongs to the technical field of traditional Chinese medicinal material cultivation. According to the technical scheme,the method comprises the steps of seedling culture field site selection, soil preparation and fertilization operation, seedling culture bed arrangement, matched irrigation facility installation, seedcleaning, seed soaking and germination accelerating, sowing, full stand management, seedling stage management and seedling lifting and storage. Compared with the prior art, the method has the beneficial effects that the problem of low survival rate of scutellaria baicalensis is solved, the survival rate is increased by 30% or above compared with a seed direct sowing mode, and the yield per mu is increased by 10% or above; the land is deeply ploughed, the land fertility is guaranteed, and root seedlings with long main roots can be easily obtained; high-bed seedling culture is performed, so thatdamage to seedlings in rainy and waterlogging seasons is reduced, and seedling lifting during breeding is facilitated; through seed cleaning, seeds which are insufficient in plumpness and damaged byworms or damaged can be removed, meanwhile, dirt and mildew on the surfaces of the seeds are removed, and full seedlings and strong seedlings can be guaranteed; and seed soaking and germination accelerating are performed, and seedling emergence time can be shortened.