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153 results about "Disease Association" patented technology

Heterogeneous graph neural network-based multi-dimensional data disease association prediction method and device

The invention discloses a multi-dimensional data disease association prediction method and device based on a heterogeneous graph neural network, and the method comprises the steps: collecting and integrating multi-source data, and obtaining an association relationship and an association weight between a disease and each factor; constructing a heterogeneous graph based on the incidence relation and the incidence weight between the disease and each factor, dynamically distributing the relation weight through an attention mechanism, optimizing the heterogeneous graph, and obtaining an optimized heterogeneous graph neural network model; and predicting a potential disease based on the optimized heterogeneous graph neural network model to obtain a prediction result, and integrating the prediction result into the heterogeneous graph neural network model to form a final disease network. According to the method, complex association between diseases can be comprehensively captured, the expression ability and prediction precision of the network are improved, multi-dimensional association is automatically learned through the heterogeneous graph neural network, the tedious process of manually setting meta-paths is avoided, the risk of human deviation is reduced, and meanwhile the analysis efficiency is improved.
Owner:SHENZHEN UNIV

MiRNA-disease association prediction method based on graph neural network

ActiveCN119763668ABiostatisticsBiological modelsPredictive methodsDisease description
The invention provides a miRNA-disease association prediction method based on a graph neural network, and relates to the technical field of graph neural networks. The method comprises the following steps: acquiring miRNA sequence, a disease description text, miRNA family information, a disease father-son relationship and miRNA-disease association relationship data, and constructing a heterograph after performing data alignment; based on the miRNA sequence and the disease description text, using a pre-training language model to obtain miRNA representation and disease representation as node features, and updating the heterogeneous graph; and constructing a heterograph MDA association prediction model, and inputting the updated heterograph and the to-be-predicted miRNA-disease pair to obtain an association prediction score of the to-be-predicted miRNA-disease pair. According to the method, the biological entity can be fully expressed in entity expression; according to the method, information of different types of nodes can be effectively aggregated on model construction, multi-depth message passing is executed on different types of edges, integration of heterogeneous information of the nodes and the edges is achieved, and improvement of miRNA-disease association prediction performance is facilitated.
Owner:SICHUAN UNIV

Drug relocation method and system based on subgraph perception and mixed graph neural network

The invention discloses a drug relocation method and system based on subgraph perception and a mixed graph neural network, and the method comprises the steps: generating a corresponding dynamic drug-disease associated subgraph # imgabs1 # for a target drug-disease pair in a drug-disease associated network # imgabs0 #; aiming at the medicine nodes and the disease nodes in the # imgabs2, respectively constructing a medicine sub-graph # imgabs3 # and a disease sub-graph # imgabs4 #; performing deep feature extraction on # imgabs5 by applying a multi-head dynamic graph attention neural network model, and performing feature extraction on # imgabs6 and # imgabs7 on the basis of fusion of a GCN model and a GAT model to obtain final feature representations of # imgabs8, # imgabs9 and # imgabs10; and fusing the three, inputting the fused three into a drug-disease association prediction model based on a multi-layer perceptron (MLP) network, and predicting the association relationship of the target drug-disease pair. According to the invention, efficient and accurate drug-disease association prediction can be realized.
Owner:XIANGTAN UNIV

Methods, systems, and frameworks for gene disease prioritization in drug discovery

Embodiments are directed to a method for determining relationships between genes, phenotypes, and diseases that includes extracting a first set of biological data containing gene data, phenotype data, and disease data from a database, extracting a second set of biological data from a database, creating nodes on a network pertaining to each individual gene, phenotype, and disease data extracted from one of a database and documents, training multiple machine learning (ML) algorithms on a set of extracted data with matching empirical results, using at least one of the ML algorithms and the second set of biological data for determining relationships between the nodes, creating at least one of a gene-disease association score, gene-phenotype association score, and disease-phenotype association score for the relationships based on the relative association of the nodes, and displaying at least one of the association scores to a user.
Owner:BIOSYMETRICS INC

Prediction method of virulence gene based on topology and biological feature fusion

PendingCN120656551ABiostatisticsSequence analysisBiometric fusionDisease Association
The invention provides a topology and biological feature fusion-based virulence gene prediction method, which comprises the following steps of: obtaining a to-be-detected gene; inputting the to-be-detected gene into a trained DAVGAE model, and predicting the correlation degree of the to-be-detected gene and the disease to obtain a disease gene correlation prediction conclusion; wherein the DAVGAE model comprises a data enhancement module, an encoder and an inner product decoder. The problems of data sparsity and heterogeneous data integration in gene-disease association prediction can be effectively solved at least through a DAVGAE model formed by a data enhancement module, an encoder and an inner product decoder.
Owner:INNER MONGOLIA UNIVERSITY

Mirna-disease association prediction method and apparatus, electronic device, and storage medium

An miRNA-disease association prediction method and apparatus, an electronic device, and a storage medium. The association prediction method comprises: acquiring initial association data of miRNAs and diseases; calculating miRNA similarity and disease similarity on the basis of the initial association data; on the basis of the miRNA similarity and the disease similarity, constructing a dynamic hypergraph, wherein the dynamic hypergraph comprises first node features of the miRNAs, first node features of the diseases, hyperedges connected to the first node features of the miRNAs, and hyperedges connected to the first node features of the diseases; obtaining second node features of the miRNAs and second node features of the diseases on the basis of the dynamic hypergraph; and obtaining an association prediction result of the miRNAs and the diseases on the basis of the second node features of the miRNAs and the second node features of the diseases. According to the prediction method, a hypergraph structure can be dynamically learned and updated, thereby better predicting the association between miRNAs and diseases, and improving prediction performance.
Owner:BOE TECHNOLOGY GROUP CO LTD

Drug-disease association prediction method and system, computer equipment and medium

The invention provides a drug-disease association prediction method and system, computer equipment and a medium, and belongs to the technical field of computers. The method comprises the following steps: constructing a drug-protein-disease heterogeneous network, and extracting a plurality of element path sub-graphs; inputting the meta-path sub-graph into a multi-scale diffusion graph convolution module, executing learnable multi-step graph diffusion on the basis of graph convolution, synchronously capturing local adjacency and high-order topological information, and generating node embedding; and performing dynamic weighted fusion by utilizing meta-path attention to obtain unified representation. In order to relieve imbalance of positive and negative samples, implementing difficult negative sampling in the embedding space, and constructing a balance training set with the positive samples; medicine-disease features are spliced, a regularization XGBoost classifier is trained, and unknown correlation accurate prediction is achieved. By adopting the method, the drug-disease association prediction precision and efficiency are improved, multi-scale topology and priori knowledge are fused, and a powerful calculation tool is provided for drug relocation.
Owner:QUFU NORMAL UNIV

Drug-disease association prediction method, device and electronic device based on hypergraph

The present invention provides a hypergraph-based drug-disease association prediction method, device and electronic device, which relates to the field of bioinformatics, including: obtaining a drug hypergraph and a disease hypergraph; based on a hierarchical contrastive learning algorithm, inputting the drug hypergraph and the disease hypergraph into a target hypergraph convolution model to obtain an initial drug feature matrix and an initial disease feature matrix; performing interactive information aggregation through the initial drug feature matrix and the initial disease feature matrix to obtain a target drug feature matrix and a target disease feature matrix; performing association prediction through the target drug feature matrix and the target disease feature matrix to obtain a drug-disease potential association matrix. The present invention realizes accurate prediction of drug-disease potential association.
Owner:NO 2 PEOPLES HOSPITAL HUAIAN CITY

Risk assessment stabilization method for senile chronic disease detection

The invention discloses a risk assessment stabilization method for senile chronic disease detection, and relates to the technical field of medical data analysis, and the method comprises the steps: carrying out federal dynamic time warping processing on encrypted patient data streams of a plurality of medical institutions, generating a joint feature space mapping matrix, and obtaining a standard feature tensor through homomorphic encryption; inputting the standard feature tensor into a dynamic medical knowledge graph construction module, and generating a knowledge graph embedding matrix through a space-time sensitivity enhanced cross-modal attention mechanism; and fusing the standard feature tensor and the knowledge graph embedding matrix, constructing a dynamic hypergraph structure, executing dual-channel hypergraph convolution calculation, and outputting a patient-knowledge joint embedding matrix. According to the method, in the construction of the dynamic knowledge graph, the time sensitivity weight of the entity relationship is quantified through the exponential decay function, and the time-space enhanced embedded matrix is generated in combination with the cross-modal attention mechanism, so that the time sequence discrimination of the concurrent disease association strength is improved.
Owner:JILIN UNIVERSITY

Construction method, prediction system and prediction method of circular RNA and disease association prediction model based on sharing unit

The application discloses a kind of based on shared unit's circular RNA and the construction method of disease association prediction model, prediction system and prediction method, and the association prediction is realized by the circular RNA and the disease association prediction model constructed, comprising: based on known association dataset constructs circular RNA meta-path network, circular RNA similarity network, disease meta-path network and disease similarity network, the feature extraction of the aforementioned network respectively obtains circular RNA similarity feature, circular RNA meta-path feature, disease similarity feature and disease meta-path feature;Similarity feature and meta-path feature are simultaneously input into shared unit;The similarity feature output by shared unit is input into multilayer perception machine to carry out the association prediction of circular RNA and disease and update model parameter.Share unit is designed for model, and the similarity network and meta-path network of circular RNA and disease are constructed, and potential cross-view information is captured in the process of multi-view feature fusion, so as to improve the prediction performance of model.
Owner:YANGTZE DELTA REGION INST (QUZHOU) UNIV OF ELECTRONIC SCI & TECH OF CHINA

Drug relocation method and system based on heterogeneous knowledge and structure fusion

The invention discloses a drug relocation method and system based on heterogeneous knowledge and structure fusion, and belongs to the technical field of medical care informatics. The method comprises the following steps: constructing a biomedical domain knowledge heterogeneous graph; generating disease knowledge embedding and drug knowledge embedding corresponding to a target drug-disease pair based on the biomedical domain knowledge heterogeneous graph; generating disease structure embedding and drug structure embedding corresponding to the target drug-disease pair by constructing a drug-drug similarity network, a disease-disease similarity network and a drug-disease association network; and based on disease knowledge embedding, drug knowledge embedding, disease structure embedding and drug structure embedding, obtaining a drug relocation result. According to the method, complex biological network characteristics are accurately captured and complex entity information is finely modeled through an innovative drug relocation model, so that accurate drug relocation is realized.
Owner:PEKING UNIV

Intelligent health management method and system for chronic disease patient

The invention provides an intelligent health management method and system for chronic disease patients. The system comprises a physical sign abnormity module, a common disease association module, a common disease repulsion association module and a strategy module. The physical sign abnormity module can collect physical sign data, judge abnormal risk conditions of chronic diseases, and obtain abnormal physical sign data of the chronic diseases when judging that the chronic diseases have abnormal risks; the co-disease association module comprises associated diseases associated with chronic diseases, and the association degree of the chronic diseases with abnormal risks and the associated diseases is obtained; the co-disease exclusion association module comprises exclusion diseases with treatment counteracting effects with chronic diseases, and the chronic diseases with abnormal risks and the exclusion association degree of the exclusion diseases are obtained; and the strategy module allocates a corresponding common disease treatment strategy according to the association degree between the chronic disease with the abnormal risk and the associated disease and the exclusion association degree between the chronic disease and the exclusion associated disease. According to the invention, the system optimization is improved.
Owner:CHIFENG COLLEGE AFFILIATED HOSPITAL

Incremental learning method for identifying disease-related multi-view image converter

The invention discloses a multi-view graph converter incremental learning method for identifying related diseases. The method comprises the steps of 1, heterogeneous network construction, 2, mask contrast learning, 3, graph converter feature extraction, 4, channel attention fusion, 5, depth matrix decomposition prediction and 6, incremental learning updating. According to the method, a heterogeneous network is constructed to integrate multi-source similarity data, mask contrast learning is utilized to generate multi-view embedding so as to reduce noise, node position information is coded by means of a graph converter, multi-view features are fused through a channel attention mechanism, disease association is further predicted through depth matrix decomposition, and the disease association prediction accuracy is improved. And an incremental learning strategy is designed to realize dynamic updating of new data, a new result is obtained under the condition that original input data and model retraining are not needed, and the method can adapt to the condition of explosive increase of the data.
Owner:SHIHEZI UNIVERSITY

PiRNA and disease association prediction method, device and equipment based on comparative learning

The invention discloses a pi RNA and disease association prediction method, device and equipment based on comparative learning. The method comprises the following steps: step S1, constructing a p RNA-disease heterogeneous graph network; s2, fusing the multi-level semantic information; step S3, according to the node representation, introducing a Transform model, and enhancing the global association modeling capability of the piRNA and the disease node; s4, constructing a topological graph and a semantic graph; step S5, obtaining an accurate p iRNA-disease association prediction score; the prediction device comprises a heterogeneous graph construction unit, a node embedding learning unit and a node embedding learning unit. An input and output unit, a storage unit, a communication unit, an RAM unit, an ROM unit and a GPU of the electronic equipment are connected with one another through a bus, and the requirements for complex calculation and data interaction of a p-RNA and disease associated prediction task are met. The method has the characteristic of high prediction accuracy.
Owner:XIAN UNIV OF TECH

Double-gene rare variation and disease relevance prediction model as well as establishment method and application thereof

The invention relates to a double-gene rare variation and disease relevance prediction model and an establishment method and application thereof, and belongs to the technical field of biological medicines.The establishment method of the double-gene rare variation and disease relevance prediction model comprises the following steps that S1, a sample library is screened; s2, performing quality control on whole exome sequencing data (WES); s3, performing phenotype screening; s4, performing grouping design; s5, carrying out PheWAS logistic regression analysis; s6, performing Firth logistic regression analysis and verification; and S7, carrying out double-gene feature analysis and double-gene pathogenicity relevance prediction. The method for analyzing the correlation between the rare double-gene variation and all disease phenotypes is designed for the first time, and a new method is provided for screening hereditary pathogenic factors of various diseases.
Owner:XIANGYA HOSPITAL CENT SOUTH UNIV

Disease dynamic prediction method and device based on multi-source factors, medium and program product

The embodiment of the invention provides a disease dynamic prediction method and device based on multi-source factors, a medium and a program product, and relates to the field of intelligent medical treatment. Through adaptive segmentation normalization and multi-source feature fusion technologies, the heterogeneity problem of multi-source physiological data is effectively solved, and the robustness of feature expression is remarkably improved while key physiological events are reserved; according to the dynamic prediction model based on the space-time-disease association tensor and the disease collaborative gating, explicit modeling of the three-dimensional relationship of the disease category, the physiological index and the time step is realized for the first time, so that a specific physiological index time sequence mode dependent on diseases such as arrhythmia and the like is accurately captured; the accuracy of multi-label prediction is greatly improved through coding disease co-occurrence prior; in combination with a dynamic width full-connection layer and a gradient-driven adaptive optimization strategy, the model can automatically adjust a network structure and training parameters according to the complexity of input features, and the accuracy is improved.
Owner:THE FIRST AFFILIATED HOSPITAL OF SHANDONG FIRST MEDICAL UNIV (QIANFOSHAN HOSPITAL OF SHANDONG PROVINCE) +1

MiRNA-disease association prediction method based on adaptive content guided fusion mechanism and multi-scale gated convolution

The invention designs a miRNA-disease association prediction method based on an adaptive content guided fusion mechanism and multi-scale gated convolution. Firstly, miRNA function similarity, disease semantic similarity and Gaussian interaction spectrum kernel similarity of the miRNA function similarity and the disease semantic similarity are calculated, the weight of each similarity matrix is adjusted through a self-adaptive content guide fusion mechanism, and similarity information contributing to a prediction task is automatically concerned. The method comprises the following steps: firstly, carrying out feature extraction through multi-scale gating convolution by combining Laplacian features and Weisfeier-Lehman absolute role coding features, and finally, connecting learned feature representations of miRNA and diseases, and sending the feature representations into an XGBoost classifier for training and predicting potential association of miRNA and diseases. The working mechanism of miRNA in diseases is deeply explored, practical application value is achieved for clinical diagnosis and prevention, and meanwhile discovery of a novel therapy is promoted.
Owner:HARBIN UNIV OF SCI & TECH

Drug relocation method for integrating multi-source biological data based on meta-path

The invention relates to the technical field of drugs, in particular to a drug relocation method for integrating multi-source biological data based on a meta-path, which comprises the following steps: acquiring an original data set; constructing a fusion heterogeneous network, and fusing the incidence matrixes of every two combinations of drugs, diseases and proteins and the respective similarity matrixes to obtain a heterogeneous graph; designing a multi-level association path based on meta-path and similarity negative sampling, fusing similarity information of same-level networks in the heterogeneous network based on a similarity principle, and selecting a negative link sample; extracting drug characteristics; constructing an SMS-MPF module, carrying out migration on the meta-paths through a heterogeneous network, extracting and fusing features among different meta-paths, and obtaining associated features of drugs and diseases; and inputting the disease phenotype similarity matrix, the drug characteristics and the associated characteristics of the drugs and the diseases into an associated prediction module to obtain final node representation. The method solves the problem that an existing method has significant defects in selection of positive and negative samples.
Owner:CHANGZHOU UNIV

Drug-disease association prediction method based on layered negative sample sampling

The invention belongs to the technical field of graph neural network models, and particularly relates to a drug-disease association prediction method based on layered negative sample sampling. According to the method, node information is iteratively updated by using a graph convolutional network and a graph attention network, and neighborhood features and neighbor interaction features in drugs and disease similar networks are comprehensively considered in combination with a disease-drug association network. For the generated sample information, the method adopts a layered structure sampling technology, and a reliable negative sample drug-disease pair is constructed by combining a PageRank algorithm and a GAT attention score; finally, the homogeneous neighborhood and heterogeneous neighborhood features are fused through comparative learning, and universal field features of drugs and diseases are obtained. In addition, case analysis is carried out on Parkinson's disease and Alzheimer's disease, and the effectiveness of the method is verified through an authoritative data set of public literatures, clinical data, DugBank and DugCentral.
Owner:QUFU NORMAL UNIV

IncRNA-disease association prediction method based on KAN network

The invention is suitable for the field of lncRNA and disease association prediction, and particularly provides an lncRNA-disease association prediction method based on a KAN network, and the method comprises the following steps: fusing lncRNA-disease association network information and various similarity information of lncRNA and diseases to construct a comprehensive heterogeneous network; the method comprises the following steps of: constructing a Transform feature extractor based on a multi-head attention mechanism, wherein the Transform feature extractor is used for capturing global serialization features from lncRNA and a disease node; constructing a GraphSAGE feature extractor based on a heterogeneous graph network, wherein the GraphSAGE feature extractor is used for capturing topological structure features of lncRNA and a disease node; the global serialization features and the topological structure features are fused, and comprehensive lncRNA-disease association pair feature information is obtained; and a KAN network used for predicting the association score between the lncRNA and the disease is constructed. According to the method, global sequence features are extracted in combination with Transform, heterogeneous network topology information is mined through GraphSAGE, a nonlinear relation is modeled through a KAN network, multilevel information of lncRNA and diseases is fully mined, and the accuracy of correlation prediction between lncRNA and diseases is improved.
Owner:ANHUI AGRICULTURAL UNIVERSITY

HLA typing method, system and equipment based on third-generation full-length transcript sequencing data and medium

The invention relates to the technical field of bioinformatics, and discloses a three-generation full-length transcript sequencing data-based HLA (human leukocyte antigen) typing method, system, equipment and medium, by utilizing the technical advantage of long read length of a three-generation sequencing single molecule, a complete transcript sequence of an HLA gene is directly obtained, full-length HLA typing without PCR (polymerase chain reaction) amplification and short read length splicing is realized, and the method, the system and the equipment are simple and convenient to operate. The blank of the three-generation full-field transcript in the aspect of detecting the HLA typing is filled. The method effectively solves the problem that the cost, the efficiency and the accuracy are difficult to consider in the traditional HLA typing technology, not only avoids PCR amplification preference and short read length assembly errors and remarkably improves the typing accuracy, but also reduces the analysis complexity through an optimized bioinformatics process. According to the method, an efficient solution with economical efficiency and reliability can be provided for application scenes such as clinical transplantation matching and disease association research, and the method has important clinical application value and wide market prospects.
Owner:BEIJING VIEWSOLIDBIOTECH

Drug and disease association prediction method based on hyperbolic graph feature learning network

The invention belongs to the technical field of drug and disease association prediction, and particularly relates to a drug and disease association prediction method based on a hyperbolic graph feature learning network, and the method comprises the following specific steps: S1, obtaining drug and disease association data from a database, and constructing a drug similarity matrix DR and a disease similarity matrix DS, the features are extracted and then mapped to a hyperbolic space, and a hyperbolic drug initial feature matrix ZRH and a hyperbolic disease initial feature matrix ZDH are obtained and used for constructing a drug-disease adjacency matrix A; according to the method, similar features and heterogeneous features are effectively extracted through the hyperbolic graph feature reconstructor and the hyperbolic heterogeneous variable graph converter, and the accuracy of the features is improved; in addition, similar features and heterogeneous features are effectively fused through the hyperbolic collaborative representation learning strategy, and the comprehensiveness of the features is improved; in addition, the positive and negative fusion difficulty sampling strategy synthesizes the most informative negative sample, and can better distinguish the positive and negative sample pairs.
Owner:CHENGDU QUANYI INTELLECTUAL PROPERTY OPERATION CO LTD

Drug-disease association prediction method, system, equipment and medium

The invention discloses a drug-disease association prediction method, system, device and medium, and relates to the technical field of drug relocalization, and the method comprises the steps: constructing a drug similarity network and a disease similarity network; obtaining a binary adjacency matrix through k-neighbor graphs of different nodes in the two similarity networks, carrying out weighted fusion on the binary adjacency matrix through an attention coefficient to obtain a soft adjacency matrix, and carrying out fine-grained graph convolution updating to obtain drug features and disease features; extracting heterogeneous node representations of drugs and diseases in the biochemical heterogeneous network, and carrying out dynamic weight distribution on different representations to obtain final embedding of drug nodes and disease nodes; and splicing the final embedding of the drug nodes and the final embedding of the disease nodes, and performing prediction according to the spliced features to obtain the drug-disease association probability. According to the method, the potential complementary relationship between the two is fully mined, and the heterogeneous feature fusion effect is improved, so that the performance and robustness of drug-disease association prediction are integrally enhanced.
Owner:NINGXIA UNIVERSITY

A drug-drug interaction prediction method based on secure multi-party computing

The present invention discloses a method for predicting drug-drug interactions based on secure multi-party computing, comprising the following steps: S1, obtaining a drug-drug interaction network, a drug-protein interaction network, a drug-disease association network, and a drug-side effect association network; S2, calculating Jaccard similarity based on different drug features to obtain similar features between all drugs, and using principal component analysis technology to reduce the dimensionality of all drug similarity features; S3, dividing each user's private feature data into four parts, encrypting them using secret sharing technology, and sending them to four servers using an additional secret sharing mechanism; S4, inputting the four parts of feature data into a preset private deep learning model to predict drug-drug interactions. The present invention enables high-quality collaboration between pharmaceutical companies and research institutions without leaking drug privacy information, thereby improving drug-drug interaction prediction.
Owner:HUNAN UNIV

Disease-specific quantitative trait site recognition method based on multi-omics integration

ActiveCN122067599AHealth-index calculationProteomicsMolecular phenotypeQuantitative trait locus
The invention relates to a disease-specific quantitative trait locus identification method based on multi-omics integration. The method comprises the following steps: acquiring variation sites of whole genome sequencing data of a target object, and molecular phenotypes and molecular abundance of molecular phenotype data; determining an association significance probability value of an association pair formed by the variation point and the molecular phenotype based on the variation point and the molecular abundance, and screening a first association pair from the association pair based on the association significance probability value and condition analysis; determining a consistent second association pair in the normal association pair and the disease association pair, and determining a third association pair with a disease interaction effect in the second association pair; calculating a first effect estimation value and a second effect estimation value of each third association pair; and based on the first effect estimation value and the second effect estimation value of the third correlation pair, determining a target correlation pair related to the Parkinson's disease, and taking the target correlation pair as the identified quantitative trait site. By adopting the method, the Parkinson's specific pathogenic heritable variation can be accurately identified.
Owner:XIANGYA HOSPITAL CENT SOUTH UNIV

Drug recommendation method and system based on drug mapping and diagnosis augmentation

The application discloses a drug recommendation method and system based on drug mapping and diagnosis enhancement, the natural language processing technical field and the recommendation system field, aiming at the problems of implicit drug and disease association, single diagnosis information and poor interpretability in the existing drug recommendation technology, and realizes accurate recommendation through four core modules: a diagnosis enhancement module utilizes a large language model to associate diagnosis and treatment methods, physical examination, and generates enhanced diagnosis information; a drug mapping module establishes an explicit association of drugs, diagnosis and treatment methods, a drug recommender module combines a cross-attention mechanism and a graph neural network, and respectively models enhanced diagnosis representation and drug external knowledge; and a joint training module balances single-disease and global recommendation loss to optimize model performance. The application is superior to existing mainstream models in various indicators, can significantly improve the accuracy, clinical interpretability and safety of drug recommendation, and is suitable for assisting doctors in formulating personalized medication schemes.
Owner:QILU UNIVERSITY OF TECHNOLOGY (SHANDONG ACADEMY OF SCIENCES) +1

Automatic analysis and generation system for accurate report based on gene detection data

The invention discloses an accurate report automatic analysis and generation system based on gene detection data, and belongs to the technical field of bioinformatics and artificial intelligence. The system comprises a variation intelligent labeling module, a heterogeneous knowledge graph reasoning module, a scene adaptive report generation module and an intelligent quality control and feedback module; a three-layer heterogeneous knowledge graph containing gene-disease association, drug-gene interaction and clinical guide decision is constructed, variation-disease association reasoning is performed by adopting a relational graph attention network, scene adaptive generation of report content is realized in combination with a semantic slot filling mechanism, and the four modules form a closed-loop collaborative system through deep coupling. Gene detection data can be automatically converted into a clinical diagnosis report, and the report generation time is shortened from 48 hours to 30 minutes or less.
Owner:GUANGZHOU ZHILI MEDICAL DIAGNOSIS TECH CO LTD

IncRNA and disease association prediction method based on multitask graph attention and information completion

The invention discloses an lncRNA and disease association prediction method based on multitask graph attention and information completion, and belongs to the field of data mining in bioinformatics. The method comprises the following steps: firstly, according to an lncRNA interaction spectrum set, a miRNA interaction spectrum set and MeSH description of a disease, respectively calculating to obtain an interaction spectrum similar matrix SL of the lncRNA, an interaction spectrum similar matrix SM of the miRNA and a semantic similar matrix SD of the disease; secondly, the similar information is combined with LMA, LDA and MDA to construct an lncRNA-miRNA heterogeneous network, an lncRNA-disease heterogeneous network and a miRNA-disease heterogeneous network; then, internal representation of similar information is obtained through a GCN to serve as initial embedding, high-order topological information of interaction nodes is extracted through a graph attention Unet model, and an incidence matrix is reconstructed through a bilinear decoder; and finally, constructing a multi-task learning framework, and realizing association prediction through an information completion method. Through experiments, the powerful performance of predicting potential correlation between the lncRNA and the disease by the model is effectively verified.
Owner:XINJIANG UNIVERSITY

Disease analysis system based on improved hyperbolic graph neural network model

The invention discloses a disease analysis system based on an improved hyperbolic graph neural network model, which combines hyperbolic space embedding, high-order spectral filtering and an adaptive mechanism to improve the expression and reasoning ability of multi-scale structural features in a medical knowledge graph. The system can extract richer structural features in a frequency domain by introducing a high-order spectrum filter constructed based on a Legendre polynomial; automatically adjusting the receptive field range of the filter to adapt to different graph structures by using a self-adaptive order; and disease node classification and relation prediction are realized through logarithm mapping and a neural classifier. Experimental results show that compared with an existing method, the method has higher accuracy and lower loss value in disease map node classification and link prediction tasks, a structured medical knowledge system can be optimized, medical map information can be complemented, potential disease association and drug connection can be found, and the method has good clinical application prospects.
Owner:BEIFANG UNIV OF NATITIES

IncRNA and disease association prediction method based on deep learning

The invention belongs to the technical field of bioinformatics, and particularly relates to an lncRNA and disease association prediction method based on deep learning, which comprises the following specific steps: firstly, according to known lncRNA-disease association information, disease-miRNA association information and lncRNA-miRNA association information, constructing an lncRNA-disease association matrix, a disease-miRNA association matrix and an lncRNA-miRNA association matrix; and constructing an lncRNA comprehensive similarity matrix LS, a disease comprehensive similarity matrix DS and a miRNA comprehensive similarity matrix MS. The biological sequence selective compression network adopted by the invention can effectively model a long-distance dependency relationship in an ultra-long sequence and dynamically distinguish key functional fragments from redundant fragments according to context.
Owner:GUANGDONG UNIV OF TECH