The invention belongs to the technical field of magnetic particle imaging, particularly relates to a whole-body-oriented three-dimensional magnetic particle imaging method, a system and an equipment, and aims to solve the problem that whole-body imaging cannot be performed simultaneously during magnetic particle imaging. According to the invention, a single group of magnetic particle imaging systems are coupled to form an array type magnetic particle imaging system, and the imaging view is enlarged from a local part to a whole body size. In the signal acquisition process, excitation and receiving coils of each group of magnets in the whole body magnetic particle imaging system are synchronized, denoising and filtering amplification are carried out on obtained electromagnetic induction signals, image reconstruction is carried out by utilizing a deconvolution or regularization method, reconstructed images in all imaging view fields are spliced, finally, a three-dimensional distribution image of the magnetic particles in the whole body is obtained, whole-body imaging of an observed object is achieved, and high examination and diagnosis accuracy is achieved.