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The application discloses a dCAPS molecular marker for amplifying a SNP site of a QTL of wheat scab and application thereof in the technical field of molecular biology, is located on the long arm of chromosome 5B of a wheat Chinese spring reference sequence, and a primer pair comprises a forward primer and a reverse primer, and the nucleotide sequences of the forward primer and the reverse primer are shown as SEQ ID NO. 1-2. The molecular marker is closely linked to scab resistance in the application, has high diagnostic accuracy, and can be widely used in assisted breeding of wheat resistant to scab.