A molten carbonate fuel cell stack and a method of operating a molten carbonate fuel cell stack, which fuel cell comprises a porous anode, a carbonate-comprising matrix and a porous cathode, wherein the anode section is supplied with a hydrogenous gas and the cathode section is supplied with a gaseous mixture comprising oxygen and carbon dioxide, the fuel cell is operated at a temperature in a range of about 823-973 K, with the carbonate of the carbonate-comprising matrix being in a fluid state, oxygen and carbon dioxide are reacted at the cathode, yielding carbonate ions which move from the cathode to the anode generating an electric voltage between the anode and the cathode and an electrical current circulating in the external circuit and water that has been formed is led away from the fuel cell together with carbon dioxide, comprising sampling the temperature of inlet of the reactants, sampling the temperature of outlet of reactants, sampling the current density and voltage sampling the flow rate and gas composition of the inlet and outlet gases analyzing the sampled temperature, current density, voltage flow rates and gas composition, and regulating the inlet flow rate such as the pressure drop between inlet and outlet is below 20 mbar and the temperature in each element of a cell of the stack is below 973K.