The invention discloses a carrier fixed bed bioreactor and a water treatment system comprising the carrier fixed bed bioreactor. The carrier fixed bed bioreactor comprises a tank body and a fillter; alower-layer hole net is arranged at the lower part of the tank body and is used for supporting a filler, a plurality of lower holes penetrating through the lower-layer hole net in the thickness direction are formed in the lower-layer hole net, and the diameter of the lower holes are designed to be smaller than the diameter of the filler; an upper-layer hole net is arranged at the upper part of the tank body and is used for blocking the filler, a plurality of upper holes penetrating through the upper-layer hole net along the thickness direction are formed in the upper-layer hole net, and the diamerter of the upper holes is designed to be smaller than that of the filler; the filler is kept in a space defined by the lower-layer hole net, the upper-layer hole net and the corresponding side walls of the tank body, and the total volume of the filler is smaller than the volume of the space, so that when the filler is deposited on the lower-layer hole net, the top of the filler is separated from the upper-layer hole net, wherein the density of the filler is slightly larger than that of water, so that the filler is deposited on the lower-layer hole net when water introduction is stopped, and the filler floats and is blocked by the upper-layer hole net when the flow speed of introduced water reaches a preset flow speed or above.