The present invention relates to a method of producing homocysteine diagnostic kit, which is based on the small molecule capture technology. The method adopts the combination of gene mutation enzyme and small molecule substance to be detected; the gene mutation enzyme is named as small molecule capture enzyme; and the small molecule capture enzyme after mutation and modification maintain and even enhance the affinity to the substrate or the small molecule substance to be detected, but the catalytic capability and the decomposition capacity of the small molecule capture enzyme after mutation and modification to the substrate or the small molecule substance to be detected is weakened. The invention provides a method of researching and producing the homocysteine (HCY) diagnostic kit, which is based on the small molecule capture technology, and also provides mutated S-adenosine homocysteine hydrolase; and the specific S-adenosine homocysteine (SAH) capture enzyme can fully maintain and even enhance the affinity to the S-adenosine homocysteine (SAH), but the catalytic capability to the HCY or the S-adenosyl homocysteine (SAH) is weakened. The method is in particular suitable for small molecule substances, such as inorganic ions, amino acids, polypeptides, nucleotides, oligonucleotide, vitamins, monosaccharides, oligosaccharides, lipids and organic acids.