The invention relates to the technical field of immersed tube tunnel construction, in particular to a negative buoyancy immersed tube and a prefabricating method thereof. The immersed tube comprises abody, wherein the designed freeboard value of the body is smaller than 0. According to the negative buoyancy immersed tube, pipe joints do not need to be designed to be capable of self-floating in acorresponding water area, therefore, the section height of the immersed pipe does not need to be increased for guaranteeing the minimum freeboard value during floating transportation, the design contradiction between freeboard value consideration and anti-floating in the operation period in the design link is avoided, a dry dock does not need to be set for freeboard value detection, the method isparticularly suitable for engineering projects with limited fields, the design concept that a self-floating immersed tube must be adopted in the prior art is broken through, the structural height canbe reduced to the maximum extent, the engineering amount of a main body structure, foundation trench backfilling and the like is reduced, a freeboard adjusting layer does not need to be arranged, theprefabricating cost and the construction cost are effectively reduced, design difficulty and prefabricating difficulty are reduced, the cumbersome operation of adjusting the freeboard value in water in the floating transportation link is avoided, the transportation time can be shortened, and the method has important popularization significance and good application prospects.