The invention discloses a RNA interference vector based on site-specific recombination, and construction method and application of the same, belonging to the field of biotechnology. The interference vector provided by the invention sequentially comprises the following connected parts: a homologous recombination arm 1 in homologous recombination with the upstream of a certain intron region of the integrin receptor beta 3 gene of pig, a human U6 promoter sequence, a multiple cloning enzyme digestion site, a human U6 terminator sequence, a new Neomycin resistant gene containing a PCMV (Porcine cytomegalovirus) promoter, a homologous recombination arm 2 in homologous recombination with the downstream of a certain intron region of the integrin receptor beta 3 gene of pig, a replication origin gene, an ampicillin resistant screened gene and a enzyme digestion site for vector linearization. The interference vector provided by the invention realizes accurate targeting to swine-origin cell genome, and facilitates screening, meanwhile, the influence of insertion of segment on the gene expression can be predicted, which is convenient for the following experiment.