The invention discloses an underwater unmanned ship control system. The underwater unmanned ship control system comprises a sealed underwater unmanned ship with zero buoyancy and a water control terminal. A controller, a driving module, a fish finding module and a communication module are arranged in the underwater unmanned ship, the driving module, the fish finding module and the communication module are all connected with the controller, the fish finding module sends a fish finding result to the controller, the controller uploads the fish finding result to the water control terminal through the communication module, the controller uploads the fish finding result of the fish finding module to the water control terminal through the communication module and receives a control command sent by the water control terminal, work among all the modules is adjusted according to the control command, and the driving module is used for driving the sailing direction of the underwater unmanned aerial vehicle. A diving fishing or fish catching function can be achieved, the fish finding module is arranged on the unmanned ship, underwater objects are detected, certain depth diving can be achieved, the fish finding module is used for underwater image collection, remote communication with a bank side can be achieved, and underwater image information is fed back in real time.