The invention discloses a gingko container cutting seedling method. The method comprises the following steps that firstly, a seedling container is selected; secondly, seedling matrix kinds are selected, disinfection is carried out, and the seedling matrix is the mixture of grass carbon, perlite and vermiculite; thirdly, a seedbed is established; fourthly, cutting seedling is carried out, hard branch cutting or twig cutting is selected, and cutting preparation, cutting slip shearing, cutting slip processing and cutting are included; fifthly, container seedlings are managed, and water management, light management, nutrient management, insect pest and weed prevention and matrix refill are included. By means of the method, the survival rate of the cutting seedling can be improved, the supply number of ginkgo seedlings is increased, the seedling cost is reduced, the gingko seedlings can be selectively cultivated in a directed mode according to the purpose of the seedlings, and a feasible scheme is provided for the application of a large number of the gingko seedlings in production.