The invention discloses an alternating current and direct current mixed micro power grid system and a control method thereof. The system comprises a photovoltaic module, an inverter, a direct-current converter, a storage battery, a super capacitor, an alternating current load, a direct current load, a direct current bus, an alternating current bus, an SVG (scalable vector graphics) and an APF (active power filter) and the like. The control method comprises the following steps: firstly detecting the voltage and frequency of a main network, if the voltage and the frequency are normal, grid-connected operation is adopted in the system, otherwise, isolated island operation is adopted; if the grid-connected operation is adopted in the system, PQ (performance qualification) control is adopted in the inverter, and constant voltage control is adopted in the direct current converter; if the isolated island operation is adopted in the system, V/F control is adopted in the storage inverter with maximum capacity and a super capacitor, the PQ control is adopted in other inverters, and the constant voltage control is adopted in the direct current converter; and finally, the energy storage capacity is enabled to be within an optimum range under the condition that the system is in normal operation. With the adoption of the alternating current and direct current mixed micro power grid system and the control method thereof, the problem of operation control of the alternating current and direct current mixed micro power grid system is solved, the reliability, safety and economy of the system are improved, and the utilization efficiency of renewable energy sources is improved.