The invention discloses a method for processing agricultural running water pollution by utilizing bank and a compound system for processing running water pollution. A multi-level infiltration bed is constructed at the lower end of an agricultural running water converging channel along the bank from top to bottom, and consists of aquatic plants at the upper part and fillers at the lower part, a sand settling-buffering tank is arranged in front of each level of infiltration bed for settling sand, after the sand settling process, running water enters the infiltration bed for infiltration process, and the running water processed by a multi-level sand settling-infiltrating system is finally discharged into soil or water body by a water outlet area at the tail part of the system. In the invention, the bank is fully utilized for buffering water flow impact, water inlet quality is homogenized, and the purifying effect of running water pollutant is improved. Besides the traditional advantages of simple construction, convenience in operation and management, low cost and the like, the invention also has the advantages of no energy consumption, difficult blockage, small investment, convenience in operation and management, and strong anti-impact and anti-load capability.