The invention discloses a scheduling method for an export container wharf pile-up space. Two-stage modeling is performed from plan allocation to dynamic allocation. At a pre-allocation stage, a block plan is researched, and the follow-up dynamic allocation is guided by the block plan. In the block plan, a block allocation model based on the ecological neutral theory is proposed. According to the block allocation model, container blocks are abstracted as islands, and container groups are abstracted as species, and thus, a process of allocating the container groups to the container blocks is escaped into a process that ecological selection is performed on the islands by a plurality of species. Based on the block allocation model, by aiming at the characteristic of the block plan problem, the block allocation model is optimized by the scheduling method for the export container wharf pile-up space, and an improved ecological neutral theory model is proposed. At a dynamic allocation stage, yard bay allocation and container space allocation are combined, solving is optimized by bi-objective combination, and a combination cellular automaton model is proposed. According to the combination cellular automaton model, the yard bay allocation is abstracted as an external cellular model, and the container space allocation is abstracted as an internal cellular model.