The invention provides a method for analyzing stress of an asphalt pavement structure in different interlayer bonding states, and belongs to the technical field of asphalt pavements. The problems thatat present, modeling of pavement structures in different interlayer bonding states is inaccurate, and results have errors are solved. The method comprises the following steps: generating an asphalt pavement structure initial model with determined gradation of each layer by adopting discrete element software; secondly, setting corresponding boundary conditions, physical parameters of a material ina pavement structure layer and a contact model among unit particles, and establishing a discrete element mechanical analysis model; and finally, using a servo mechanism for simulating vehicle loads to load the asphalt pavement in different combination states, monitoring tensile stress, shear stress, tensile strain and pavement surface deflection value data at the load positions of all structurallayers of the pavement, drawing a stress data comparison graph, and analyzing the stress conditions of the asphalt pavement structure in different interlayer combination states. The method provided bythe invention is visual, simple and convenient, accurate in calculation data, and suitable for simulating various asphalt pavements in different interlayer states.