The invention discloses a preserving compound special for compound flowers and plants and a preparation method thereof. The preserving compound is prepared from the following raw materials in parts by weight: 11-22 parts of methotrexate polyglutamate, 6-11 parts of mascagnite, 8-15 parts of plant ash, 13-20 parts of nisin, 4-8 parts of ethylene ethyl glycine, 2.5-6 parts of natamycin, 15-21 parts of chitosan, 7-12 parts of calcium silicate, 1.5-3.2 parts of glycolamide, 1.2-3.4 parts of garlic extract and 1.3-2.4 parts of Chinese herbal medicine aqueous extraction. According to the invention, various raw materials are compounded, so that the anti-bacterial property is greatly promoted and the antibacterial spectrum is greatly widened. The Chinese herbal medicine components are reasonably combined with each other and are extracted in classifications, resistance substances have a synergic effect with the Chinese herbal medicine components, the comprehensive coordinating effect and the overall calling function for microorganism antagonism can be achieved, the antibacterial effect is stronger and the color-protecting and glorifying effects are obvious. The Chinese herbal medicine-containing preserving compound special for compound flowers and plants disclosed by the invention has safe and environment-friendly components and contains no harmful chemical component, the preparation method is simple and the operation is simple and convenient in use.