A multiplex-polymerase chain reaction (PCR) primer is designed by a sugarcane endogenous gene ALS and an exogenous gene element (including Ubiquitin promoter, NOS promoter, NOS terminator, a Bar gene and a Bt gene). After being optimized, a multiplex-PCR reaction system is established, wherein a template which has 60% Premixtaq<TM> volume, 0.3muM primer concentration and 150ng DNA is added into the reaction system, and the annealing temperature of the reaction system is set to be 56 DEG C; a sugarcane internal standard gene (ALS gene) and five exogenous transgenic elements (including the Ubi promoter, the Bt gene, the Bar gene, the NOS promoter and the NOS terminator) can be detected at the same time by one-time PCR reaction, and the detection limit reaches 1% of the DNA content of the template. The multiplex-PCR reaction system established by the experiment not only is capable of detecting the exogenous gene composition of transgenic sugarcane, but also is capable of effectively detecting other transgenic crops.