The invention discloses a method for constructing a shielded nuclear main pump digital prototype based on a beam finite element model, and belongs to nuclear reactor coolant pump design and manufacturing. The method comprises the following construction steps: 1, generating a nuclear main pump geometric modeling module according to a nuclear main pump part geometry and assembly relationship; 2, onthe basis of the nuclear main pump geometric model, generating a rotor assembly beam finite element modeling module, a bearing support system modeling module and a pump shell assembly beam finite element modeling module; 3, integrating a rotor assembly model, a bearing support system model and a pump shell assembly model, establishing a beam finite element overall model, generating a nuclear mainpump overall modeling module, and constructing a nuclear main pump three-dimensional digital prototype by taking an operation load database module under nuclear main pump operation parameters as information support; and 4, the nuclear main pump performance analysis module receiving the three-dimensional digital prototype, calling beam finite element overall model calculation data as input, and outputting simulation results of nuclear main pump dynamic response and noise analysis, anti-seismic analysis and part stress analysis. The method has the advantage of accurate analysis of nuclear main pump dynamic characteristics.