Tissue slices and whole organisms offer substantial challenges to
fluorescence imaging.
Autofluorescence and absorption via intrinsic chromophores, such as flavins,
melanin, and hemoglobins, confound and degrade output from all fluorescent tags. An “optical window,” farther red than most
autofluorescence sources and in a region of low
hemoglobin and water
absorbance, lies between 650 and 900 nm. This valley of relative optical
clarity is an attractive target for
fluorescence-based studies within tissues, intact organs, and living organisms. Novel fluorescent tags were developed herein, based upon a genetically targeted fluorogen activating
protein and cognate fluorogenic dye that yields emission with a peak at 733 nm exclusively when complexed as a “fluoromodule”. This tool improves substantially over previously described far-red / NIR fluorescent proteins in terms of brightness,
wavelength, and flexibility by leveraging the flexibility of synthetic
chemistry to produce novel chromophores.