The invention relates to a method for controlling power supply system featuring complementation of solar energy and fuel energy. In the method, a controller collects input electric current of a solar energy power supply device, charge-discharge electric current of storage batteries and load current of a loading equipment; when the input electric current is less than 1.5 times of load current, the system enters an oil engine auxiliary power supply mode; in the oil engine auxiliary power supply mode, the controller reads the current status of the storage batteries and the current status of the oil engine power supply device and starts up or closes the oil engine power supply device according to certain logic; in the technical proposal of the invention, solar energy power supply mode serves as the main power supply mode, as a result, the solar energy can be fully utilized, requirements for environmental protection are met, the input electric current of a solar panel and the load current of the load device can be monitored in real time; in addition, the oil engine can be started up to supply power when the solar energy power supply device can not supply enough power, thus entering the oil engine auxiliary power supply mode and realizing continuous power supply, improving utilization efficiency of the oil engine and lengthening service life of the storage batteries, strengthening reliability of the power supply system while meeting the requirements on energy conservation and reduction of consumption.