The invention discloses a compound microecological preparation for inhibiting pathogenic vibrio for breeding stichopus japonicus, which is prepared by mixing rhodopseudomonas palustris, clostridium butyricum, oak leaf extract and aloe leaf extract into a feed additive, and the addition amount of the rhodopseudomonas palustris, the clostridium butyricum, the oak leaf extract and the aloe leaf extract in each gram of feed is 105-107 cfu, 105-107 cfu, 1-2 mg and 4-8 mg; the preparation method of the oak leaf extract and the aloe leaf extract comprises the following steps: respectively cleaning oak leaves and aloe leaves with distilled water, and ventilating and drying in the shade at 25 DEG C; the preparation method comprises the following steps: respectively homogenizing and crushing oak leaves and aloe leaves by using a homogenizer, and adding an ethanol solution with the volume fraction of 65-85% according to the material-liquid ratio of 0.05-0.1 g/mL; extracting for 1-2.5 hours at normal temperature under the action of ultrasonic waves with the working frequency of 40 KHZ and the power of 80 W; and filling the extract into an ultrafiltration membrane device, filtering to remove impurities under the pressure condition of 0.06 Mpa, and carrying out vacuum concentration and freeze drying to obtain freeze-dried powder.