The invention relates to a small unmanned helicopter flight control computer system. The system comprises a communication processor, a programmable gate array, a power module, a clock module, a wireless communication module, an electronic compass, a GPS, an ultrasonic sensor, a debugging serial port, an Ethernet port, a remote-control receiver, a steering engine, a height gauge, a gyroscope and anaccelerometer, wherein the power module is connected with the communication processor and the programmable gate array; the clock module is connected with the communication processor and the programmable gate array; the wireless communication module, the electronic compass, the GPS, the ultrasonic sensor, the debugging serial port and the Ethernet port are respectively connected with the communication processor; the remote-control receiver, the steering engine, the height gauge, the gyroscope and the accelerometer are respectively connected with the programmable gate array; and the steering engine is connected with an unmanned aerial vehicle. The small unmanned helicopter flight control computer system has the characteristics of being small in volume, compact in structure, low in power consumption and strong in processing ability, and is capable of successfully realizing autonomous flight of small unmanned helicopters on the basis.