The invention discloses a method for directionally screening
a peptide fragment combined with a
target protein based on FASP-IP-MS, and belongs to the technical field of
biology. The invention aims to identify an interaction
proteome of two
chitin synthase PsCHS1 and PsCHS2 in
phytophthora sojae as target spots, and design an FASP-IP-MS method to determine a method for directionally screening
a peptide fragment combined with a
target protein on the basis of FASP-IP-MS. The method comprises the following steps: taking the two
chitin synthase PsCHS1 and PsCHS2 in
phytophthora sojae as target spots, identifying the interaction
proteome of the two
chitin synthase PsCHS1 and PsCHS2 as target spots, and designing an FASP-IP-MS method. According to the invention,
peptide fragments interacting with PsCHS1ECD and PsCHS2ECD in TUB9 are screened based on an
ultrafiltration tube assisted
proteolysis-
in vitro immunoprecipitation-
mass spectrometry method. The method has two advantages that on one hand, the
random peptide library is obtained through enzymolysis,
chemical synthesis is not needed, the cost is lower, and the required time is shorter; and on the other hand, the
random peptide library is derived from the known interaction
protein, the success rate of screening the interaction
peptide fragment is higher, and the method has important significance for improving the level of a peptidomics analysis technology.