The invention discloses an automatic pipetting workstation which belongs to an automatic pipetting device for biological and chemical experiments. The system comprises such main components as a working platform, a support frame, an X-axis precision electric-controlled flat pipetting table, an X-axis drive motor, an X-axis auxiliary guide, a Y-axis overarm brace, a Y-axis guide column, a Y-axis screw rod, a manipulator module, an electric cabinet, a computer, etc. The working platform is provided with a pipette tip recovery zone and can be provided with a pipette tip storage module, a sample storage module and the like as required. The automatic pipetting workstation has the advantages of less cross contamination, high precision, simple and convenient operation, good flexibility, high efficiency, strong applicability, low use cost, etc.