The invention discloses a wastewater treatment microbial agent and a preparation method thereof. The microbial agent contains Kocuriapalustris FSDN-A, Arthrobacter creatinolyticus FDN-1, Flavobacterium mizutaii FDN- 2. Paracoccus denitrificans DN-3 and Methylobacteriumphyllosphaerae SDN-3, the deposit registration numbers of the five strains are CGMCC No.5061, CGMCC No.3657, CGMCC No.3659, and CGMCC No. 3658 and CGMCC No.3660. The microbial bacterial agent can realize the removal of ammonia nitrogen, total nitrogen and CODcr in the same reactor, has good wastewater treatment effect, and can realize short-range nitrification and denitrification or simultaneous nitrification and denitrification denitrification while removing COD. Corkia palustris FSDN-A can utilize two kinds of nitrogen oxides, nitrous nitrogen and nitrate nitrogen, which can make the wastewater treatment system denitrify more thoroughly, and the value-added speed is slow in the process of competing for substrates, which is conducive to the reduction of sludge. Further broaden the scope of application of microbial agents.