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408 results about "Amino acid mutation" patented technology

A mutation is any random change in the DNA. The sequence of amino acids is critical to the performance of a protein; even a single amino acid in the wrong place can cause an enzyme to be non-functional or cause a disease such as Sickle Cell Anemia.

Method and system for predicting amino acid mutation

The invention relates to the technical field of biological information, and discloses a method and system for predicting amino acid mutation. The method and system for predicting amino acid mutation aim at improving the accuracy and the effect of prediction and effectively solving the problems that bioexperiment is blind, the cost of the bioexperiment is high and the like. The method for predicting amino acid mutation comprises the steps of establishing a protein sample set; determining characteristics of prefiltering, and integrating characteristics of the same sample into one characteristic sequence to combinedly establish an initial characteristic set of the sample; screening out relatively important characters through a stable character selection algorithm to combinedly establish a first screening out characteristic set of the sample; screening out important characters through a sequence forward selection algorithm to combinedly establish the final screening out characteristic set of the sample; selecting a positive sample and a negative sample to establish a training set and an independent test set, substituting the final screening out characteristic set of samples in the training set into a gradient promoting tree algorithm to be subjected to training so as to obtain a final disaggregated model, and conducting assessment on a prediction result of the disaggregated model by combining the final screening out characteristic set of the independent test set.
Owner:CENT SOUTH UNIV

Neoantigen prediction method and device based on next-generation sequencing and storage medium

The invention discloses a neoantigen prediction method and device based on next-generation sequencing and a storage medium. The method comprises the following steps: obtaining genome sequencing data of a tumor sample and a normal sample, and tumor transcriptome sequencing data; carrying out mutation detection on the genome sequencing data to obtain point mutation and insertion and deletion mutation, and carrying out fusion gene mutation detection on the tumor transcriptome sequencing data to obtain fusion gene mutation; detecting the type of an HLA molecule to obtain an HLA molecule type result, matched with the normal sample, of the HLA molecule of the tumor sample; carrying out annotation from gene mutation to amino acid mutation on the point mutation, the insertion and deletion mutationand the fusion gene mutation; predicting peptide fragments subjected to point mutation, insertion and deletion mutation and fusion gene mutation to obtain corresponding mutation prediction peptide fragments; and inputting the mutation prediction peptide fragments and the HLA molecule type result into a neoantigen prediction model, and performing scoring and sorting through the neoantigen prediction model to obtain a neoantigen prediction result. High-quality neoantigen can be accurately obtained from the sequencing data.
Owner:深圳裕策生物科技有限公司
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