The invention discloses a quantitative analysis method for phosphatidylcholine in serum through capillary electrophoresis-mass spectrum and application. The quantitative analysis method includes the steps of S1, serum sample treating, wherein a serum sample is taken and added into a phosphatidylcholine internal standard substance, methyl alcohol is directly added, incubation on ice is carried out,centrifugation is carried out, supernatant is transferred, the product is dried with nitrogen and stored, and is dissolved with the methyl alcohol before CE-MS quantitative analysis, supernatant is removed through centrifugation, and capillary electrophoresis sample feeding is prepared, wherein the phosphatidylcholine internal standard substance is phosphatidylcholine 17:0 / 14:1, MW 717.996; S2, capillary electrophoresis condition conducting; S3, mass spectrum condition conducting; S4, quantitative analysis, wherein according to the concentration and the peak area of a standard solution, linear regression is carried out, a linear equation is obtained, and then according to the liner equation and the peak area obtained through detection, the concentration of the phosphatidylcholine and theconcentration of lysophosphatidylcholine in the serum sample are calculated. The application of the method is the application to detecting alzheimer disease. Relative quantitative analysis is carriedout on the PC / PLC in the serum in a multistage reaction monitoring mode (MRM), a large quantity of interfering ions are excluded, the detection limit is 0.0001 ng / mu L, the reproducibility is good, and the recycling rate and the detection sensitivity are high.