The invention discloses a fungus cross detoxification method, which comprises the following steps of: obtaining a part of fungus tissues which can be cultured into a complete individual under the condition that a to-be-detoxified fungus strain in a development state acts for a long enough time under the action of a chemical reagent with an effective concentration and the virus carried by the strain is in a proliferation inhibition state, and detecting and screening a non-toxic strain after regeneration culture; the fungal tissue is a fungal part containing at least one whole genome copy number; the fungi in the development state are in the development state before the sporocarp of the fungi; the chemical reagent comprises one or a combination of more of 5-dihydrouracil DHT, virazole, actinomycete ketone, rifampicin and moroxydine hydrochloride, the fungal tissue comprises one of protoplast, hypha tip and hypha fragment, the fungus cross detoxification method provided by the invention can remove various viruses in the same strain, the detoxification period is short, the rejuvenation effect is good, and the method is suitable for industrial production. The method is also suitable for removing unknown viruses, and can be applied to strain degeneration caused by virus infection and / or preparation of strains with strong rejuvenation.