The invention provides a primer group for identifying
coilia ectenes,
coilia brachygnathus and hybrids thereof, a detection method, a kit and application, and belongs to the technical field of
molecular marker identification. In order to overcome the defects that morphological differences of
coilia ectenes, coilia brachygnathus and
hybrid adults are not obvious and the like, a primer pair A or a primer pair B is designed for
gene amplification, and the coilia ectenes, the coilia brachygnathus and the
hybrid adults are identified by comparing sequence differences after amplification. The sequences of amplification products of the coilia ectenes, the coilia brachygnathus and the hybrids have obvious differences, the types of the amplification products can be classified through molecular markers, and the reaction result is directly visualized in the form of a gel
electrophoretogram without a sequencing means. The method is simple to operate, intuitive in result, low in requirement on experimental equipment and low in cost, and all work can be completed within several hours without statistics. According to the invention, the
hybrid can be identified through a sequencing peak map, and compared with an SNP site identification type, the difference is more obvious, the statistical frequency is not needed, and the accuracy is high.