The invention provides a method for cultivating a novel species of capsicums by distant hybridization grafting, and relates to the method for cultivating the novel species of the capsicums. The methodincludes the following steps: a, selecting Fujian Yong'an yellow capsicums as male parents and Hunan yellow tributary capsicums as female parents; b, taking stamens of the male parents when flower buds of the male parents firstly bloom; c, collecting male pollen for standby application; d, removing stamens of the female parents; and completing pollination of the male parents and the female parents; e, performing picking when the capsicums are all yellow, and performing full ripening; and f, performing skin-seed separation, and performing removing to form hybrid capsicum seeds. The method further includes the following steps: g, planting the hybrid seeds described in the step f to form scions; h, forming rootstock by using Huangjin capsicum frutescens; i, inserting the scions into the rootstock; and j, taking out hybrid grafted capsicum seedlings, transplanting the seedlings into a field until maturity, and taking seeds to obtain the novel species-Huangzhonghuang. The method has the following beneficial effects: the novel species-Huangzhonghuang has the characteristics of early maturity, disease resistance, high spicy, a good taste, a high yield and the like; the yield is high, andthe average fresh capsicums produced per mu is 2800-3000 kg; and both dried and fresh capsicums can be used, so that a gap in dry and fresh dual purpose of species of yellow capsicums in China is filled.