The invention belongs to the technical field of disease resistance identification of horticultural crops and particularly relates to a method for identifying the resistance of epidemic diseases of capsicum annuum at the seedling stage by root dipping and inoculating. The method comprises the steps of capsicum annuum seedling preparation, spore suspension preparation, inoculation, disease investigation, evaluation and the like, wherein the bared root and caudex parts of the capsicum annuum seedlings are soaked with the spore suspension having a concentration of 10 zoospores / mL when the seedlingage is 5-6-leaf stage; the disease index is investigated on the fifth day after inoculation, and grading is performed according to the disease index, and the resistance of varieties is evaluated. Themethod can identify the resistance by utilizing a root-dipping and inoculating method, has the advantage of low inoculation concentration, can solve the problems of time and labor consumption for culturing mass bacteria, is in accordance with natural incidence situation since bacteria contact with the root part, is standard and scientific in disease index grading, has low requirement for the inoculation environment, is easy to use, and provides technical support to screening of large-scale capsicum annuum disease-resistant breeding materials.